Sentence examples for gathering threshold from inspiring English sources

A protein is taken to contain a domain if its E-value exceeds the domain-specific Pfam-defined gathering threshold.

Putative functions were assigned by domain composition after scanning the sequences against Pfam [45] using the gathering threshold as cut-off.

This indicates that the level of similarity to this domain is weaker in this protein (below the gathering threshold used in the construction of PFAM families).

We only considered the high quality Pfam-A entries that satisfied the gathering threshold (GT) cutoff.

We only considered PFAM hits that were within the gathering threshold.

The gathering threshold (cut_ga) option was used to ensure conservative domain prediction.

Alignment scores above the Pfam gathering thresholds were counted significant.

HMMER 3 [ 41] with gathering thresholds was used to annotate the samples with Pfam domains.

However, the alignment scores were in most cases below the Pfam gathering thresholds.

For Pfam, the family-specific thresholds from the Pfam database (gathering thresholds) were used if they were stricter than our default threshold.

Using manually curated cutoff scores (gathering thresholds) provided in Pfam domain HMM files, no uORFs returned significant hits to any domain.