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All sequences with an E-value below 0.1, gathering cut-off above −69.0, and length above 100 amino acids were selected for further analyses.
That is, the protein family (Pfam) "scores" of trypanosome C1-domains failed to meet the "gathering cut-off" required for their annotation [29].
The gathering cut-off threshold was used for HMMScan.
The gathering cut-off (-cut_ga), which is the minimum score a sequence must attain when building a full alignment of a Pfam entry, is applied as threshold.
We used the software HMMER (Eddy 1998) to annotate protein families in the thermophile and nonthermophile proteomes, employing the gathering cut-off criterion that minimizes false positives.
Rfam searches were performed with the gathering cut-offs suggested by Rfam, version 9.1, and the Rfam HMM filtering turned on.
McCain said he advocated gathering Europe to "cut off all credit" to Iran.
The proposed law says nothing about an independent monitoring committee, so the authorities would not be answerable to anyone when it comes to data-gathering, and can cut off access to both telephones and internet where it is deemed necessary.
The purpose of such a gathering would be to cut off the backlash against the iPhone 4 at the knees.
For domain assignments made using hmmscan against the Pfam database, profile-specific gathering threshold cut-offs were used to extract reliable hits.
He began gathering momentum in a steady crescendo that he let build until he was cut off by applause: "We have more to do to move America forward.
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