Sentence examples for gaps were trimmed from inspiring English sources
The alignment gaps were trimmed using Gblocks [54], [55].
The 78 sequences were aligned by ClustalW [59] and the gaps were trimmed by Gblocks.
[That EST, CB073527, is dated from 2003 in GenBank and attributed to H. Bode et al., Washington University Hydra EST Project.] Protein sequences were aligned using Clustal W. Manual corrections were made and gaps were trimmed.
The leaders boast a seven-point advantage at the top and, even if that gap is trimmed to six by Manchester City on Monday night, they will still benefit from a game in hand on the trio of clubs closest to them in a distant chasing pack.
The alignment result was used to guide the alignment of their corresponding nucleotide sequences, and gaps in the alignment were trimmed.
All unaligned, flanking sequence regions of the codon alignment were trimmed and all gaps were closed apart from gaps that were introduced by up to two sequences only (final sequence lengths: 126 bp, Additional file 5).
The C- and N-termini were trimmed and gap-only sites were deleted from the alignment.
The alignments of the four orthologous gene sets were trimmed for regions with gaps and missing data using trimAl [ 70].
Aligned sequences were trimmed to remove all gaps using Mesquite version 2.74 (http://www.mesequiteproject.org, last accessed December 1 , 2011.
In all cases the alignments were trimmed to eliminate columns with gaps in more than 50% of the positions.
Positions in the alignment with gaps in more than 10% of the sequences were trimmed as described in [4].
