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Gaps were treated as a missing value.
Gaps were treated as 5th state (Simmons and Ochoterena [2000]).
All characters were unordered and equally weighted and gaps were treated as missing.
The gaps were treated with either xenograft alone (control group) or xenograft combined with PRP (experimental group).
Gaps were treated as pairwise deletions.
Gaps were treated as ambiguous data.
Sequence gaps were treated as repeats.
All alignment gaps were treated as missing data.
All nucleotide sites were included in the analyses but gaps were treated as missing characters.
Gaps were treated as a state and all characters and state transformations were weighted equally.
In all analyses, gaps were treated as ambiguous rather than as a fifth state.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com