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The data with gaps were extrapolated if the gaps were less than 40%% of the event data series; otherwise, events with data gaps were excluded from the analysis.
Stations with data gaps were excluded, finally, 116 of which with continuous data series from 1960 2009 were used in this study.
Positions with alignment gaps were excluded from further analyses.
Ambiguously aligned characters and gaps were excluded from the analysis.
Positions with gaps were excluded from this analysis.
All alignment columns containing ambiguities and gaps were excluded during the PAML analysis.
Clone or contig gaps were excluded because the cause of those is different than a CfERV.
Unambiguously aligned sequences were confirmed by eye, and all gaps were excluded from the alignments prior to phylogenetic analyses.
Both alignments were manually edited (BioEdit), and ambiguously aligned regions and gaps were excluded from further analyses.
The nucleotide sequences were aligned using Clustal X [19], and alignment gaps were excluded from the analyses.
Columns with gaps were excluded.
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