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Gapfiller (v1.10) was used to fill gaps (parameter -d 3500 to fill overestimated gap sizes due to improperly oriented paired ends) (Boetzer and Pirovano 2012).
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RNA Pol2-enriched regions were identified using the SICER algorithm at a cutoff of FDR 1E-10 and a max gap parameter of 600 bp.
The model has two location-specific parameters, the planting date, and the yield gap parameter.
The energy gap parameter provides a measurement of coupling strength for phonon-mediated electron electron interaction.
where v s is the velocity of sound, L is the crystal dimension, n F is the Fermi-Dirac distribution function, and Δ is the energy gap parameter.
The energy gap parameter (β ≅ 3.6) is estimated using ωer as 60.025 cm−1 and Tc of about 4.17 K from Equation (30).
In previous reports, it was determined that the diameter of individual SWCNTs is an important factor in the device behavior, a result attributed to the band gap parameter of the SWCNTs [10].
As a next step, we focus on the magnitude of the energy gap parameter as the wide energy scale of phonons essentially points either weak or strong coupling in AMIF.
On the other hand, the gap parameter when intra-molecular phonons are considered in the pairing mechanism, is estimated as 3.57 which is close to the BCS limit where the values ωra = 847.9 cm−1 and Tc = 34 K are used.
This stiff behaviour can be attributed to the fewer number of test results based on which the original equation was developed and the ignorance of air gap parameter makes the connection stiffer.
Gap parameter optimization has previously been done only for protein alignment programs.
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