Regions with sufficient read coverage were identified using H, L and G parameters, which are read height, length in base pairs and gap permitted in the length parameter, respectively.
Finally, some design improvements were suggested for avoid future failures: a gap in the groove length at the connecting rod cap interface, enough to avoid combination of forming laps and higher stress amplitude; increase of the bolt torque assembly to reduce stress amplitude.
The lengths of gaps in the line plots indicate the deletion lengths with respect to the reference.
Distance was calculated as the total number of mismatches and gaps in the alignment divided by the length of the query (454) sequence.
Because the lengths of the real and simulated alignments differed, the positions and lengths of the gaps in the real alignments were scaled to the length of the simulated alignments (i.e., longer alignments have longer gaps than shorter alignments).
Gaps in tour length, tour time and tour cost are the measure used when comparing exact and heuristic TSP solutions.
The initial alignment from MUSCLE included unnecessary gaps in the target kinase Pak2, expanding the length of sequence about 3-fold.
Additionally, we restricted the length of gaps in the colinear chaining algorithm to 2000 bp on the E.coli and P.syringae datasets and to 5000 bp on the C.elegans and human datasets.
The gaps in the Illumina assembly had a minimum length of 239 bp, a maximum length of 5431 and a mean length of 2084 bp.
Animals were tested under positive operant conditioning, with psychometric functions constructed in response to gap-in-noise lengths ranging from 3 to 270 ms. Using a modified version of this gap-detection task, with the same stimulus frequency parameters, we also tested a cohort of normal-hearing human subjects.
