Sentence examples for gap package from inspiring English sources
Its nucleus is begin{aligned} mathcal{N } =, { 1, a, b, c }, end{aligned}and the only non-trivial relators of length (le 3) among elements of (mathcal{N }) are (a^2 = b^2 = c^2 = 1) (this can best be checked with the GAP package (http://www.gap-system.org/Packages/automgrp.html).org/Packages/automgrp.html
A Manhattan plot of the p-value results from the GWAS was produced using R 2.13.2 software [ 52] with the "gap" package [ 53].
Genome-wide p-value against SNP physical position (by chromosome) genome plots were generated using the gap package in R, version 2.7.2 (Zhao 2007).
The Manhattan plot, showing genome-wide P-values of GWAS, was produced using R 2.13.2 software with the "gap" package (Zhao 2007).
Step 2: All of the HGU133Plus2 probes in a given probeset were aligned with the corresponding rhesus consensus sequence using the GAP package in Accelrys GCG http://www.accelrys.com.
The manhattan plots and quantile-quantile (QQ) plots were drawn by the "gap" packages [ 66] in R project.
Bright ideas can sell, especially when targeted to gaps, packaged well, or even for raising money for charity, so put on your thinking cap.
Pairwise sequence comparison was carried out using the Smith and Waterman local algorithm implemented in the water program of the EMBOSS package (gap opening penalty 10, gap extension penalty 0.5, EDNAFULL matrix).
Only the 5.9 kb DNA fragment between the left end of the genome and the first gap was packaged.
To identify motif matches in the human genome, intergenic sequences were scanned with masking of repetitive DNA elements and assembly gaps (R package: BSgenome.Hsapiens.UCSC.hg19).Hsapiens.UCSC.hg19
The difficulties in bridging the gap between packages for CNV prediction, association analysis and visualization for distinguishing genuine signals from false positive/negative predictions in generally noisy datasets have hindered many scientists from conducting genome-wide CNV analysis of their existing large GWAS datasets.
