Sentence examples for gap column from inspiring English sources

David Brooks ("The Education Gap," column, Sept. 25) is looking at society through the wrong end of a telescope.

One may ask how many tosses (number of amino acids present in a gap column of an MSA) are needed in order to confidently rule out the possibility that the probability is 0.0934.

We first removed all columns containing a gap character -, and then removed columns to the left and right of a gap column until reaching a column of chemical agreement.

This leads to When applied to estimating insertion emission probabilities, this example implies that one needs to have about 137 amino acids in a gap column of a multiple alignment.

So, the gap columns of Table 3 calculated like Eq. (33) but we should use lower bound instead of best solution of the GAMS.

Next, we removed gap columns from the finished alignments.

First, we remove all gap columns and the corresponding symbols in the dot-bracket consensus structure string.

Then we marginalize the probabilities of gap columns, effectively replacing posterior of column (i, - j ) with the sum of posteriors of columns (i, - ℓ ) for all ℓ.

Using gap size of equal or less than 20 bp, we computed ratios of gap columns per coding nucleotides of the gene in pairwise human-mouse blastz alignments.

Similar modification can be done for marginalized posterior decoding, where we marginalize gap columns based on both state and gap position.

Detected regions of recombination as well as gap columns and 20 bp either side were removed as these regions are often at the edges of contigs and are more likely to contain sequencing errors or regions of poor alignment.