Sentence examples for gap characters from inspiring English sources

Gap characters were not included.

To simulate a greengenes-like alignment, I removed any column from the SILVA alignment only contained gap characters.

Gap characters were ignored.

Gap characters were coded as missing data.

Columns containing only gap characters are removed from this view.

However, in this study, gap characters usually increased phylogenetic signal.

In addition, we required at least 6 non-gap characters at both exon borders.

Pairwise 16S rDNA nucleotide divergence was calculated from this multiple alignment as the fraction of (non-gap) characters that differ between two sequences.

Each column of the sequence alignment is then assigned to the clique containing the maximal number of sequences with non-gap characters in the column.

The OHR describes the percentage of an ortholog "found" in a contig by dividing the number of non-gap characters in the query hit by the length of the subject using a script provided by Ewen-Campen et al. [ 54].

At the gaps in the alignments, at least 10% of the members (or at least 2) had to have non-gap characters in the gap position to be included in the diversity calculation of the alignment.