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In the years immediately following the war, the street tree population dropped to 35,000 in Tokyo due to a combination of further tree mortality and the cutting of trees for fire wood.
Further, tree recruitment prior to European settlement indicates that longleaf pine naturally recruited into areas 1.3 ha or less, supporting early-20th century observations that the primary longleaf pine forest was uneven-aged.
These proteins were not included in further tree reconstructions.
The BLAST-based pipeline include only BLAST search, as described above, without further tree construction.
This tree comparison method is useful for large scale phylogenetic tree comparing and can be a standard evaluating approach for further tree building methods.
In order to save computing time and power, we therefore opted for the CAT approximation with the GTR model for further tree search analyses under ML.
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The best tree obtained was submitted to PAUP for a further tree-bisection-reconnection search.
The global core-set member was first selected from the complete set of sequences by the procedures (a) and (b) in Methods, and comprised the mainframe for the further tree-building construction.
Further, trees where subclades I and II were not sisters were also rejected.
Further trees were constructed in Phylip version 3.6a3 (J. Felsenstein), using maximum parsimony and maximum likelihood methods.
By constraining the resulting trees with the optimal topology of each other locus in turn a further six tree topologies were produced for each locus.
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