Further, any alignment A for which I (S & T & A ) > I null (S & T ) = I null (S ) + I null (T ) can be rejected (see property 2 of this measure under 'Structural alignment quality and lossless information compression').
Poorly aligned regions at each end were further trimmed using an alignment quality score method described in Wu et al. [ 64], and modified for amino acid sequences by incorporating the BLOSUM62 matrix.
To evaluate the relationship between VELP and Glycam1 further, we constructed an alignment using all available VELP and Glycam1 protein sequences (Fig. 2) and maximum-likelihood phylogenetic tree using all marsupial VELP sequences and a phylogenetically representative subset of eutherian Glycam1 sequences (Fig. 3).
A further paired alignment between samples A and C shows it is very similar in equality but not quite as strong (see Table 5).
The freeway has an 3.2 km S-curve after Hutton Street, moving to an alignment further west that does not bisect any suburbs.
PA 21 was originally designated in 1927 between the West Virginia border and Uniontown, originally following an alignment further to the north between Carmichaels and Uniontown via New Salem.
MD 447 connected US 213 in Chestertown and MD 290 in Chesterville, much of which was on an alignment further north from the Chester River than modern MD 291.
At a meeting of the Route Numbering Subcommittee on the U.S. Numbered System on June 26 , 1958 it was decided to move the I-80 designation to an alignment further north while the highway between the Ohio border and the Philadelphia area would become I-80S.
A further alignment was generated using a larger set of Wnt genes containing the Wnt sequences from Caenorhabditis, Capitella, Helobdella, Lottia and Nematostella in addition to the sequences used in the first set of Wnt genes (Additional files 1 and 4).
The direct consequence of this reciprocal influence is a further alignment of the profiles, i.e., a reinforcement of the homophily.
