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The anti-parallel beta pleated sheet is a fundamental secondary structure in proteins and a major component in silk fibers generated by silkworms and spiders, with a key role to stabilize these proteins via physical cross-links.
The polyproline helix is a fundamental secondary structure of proteins that is widely employed in molecular design because of its rigidity and lack of dependence on hydrogen bonding.
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Our results corroborate the presented methodological pipeline, the fundamental relevance of secondary structure consideration, as well as the elevated power and suitability of ITS2 in phylogenetics.
Our results corroborate the fundamental relevance of including the secondary structure in sequence analysis and phylogenetics.
The correctly folded secondary structure is fundamental not only for improving the alignment [ 43- 48], but also for building the alignment itself (especially in case of variable markers such as ITS2) as well as for identifying and detecting synapomorphies.
It can be divided into several independent sub-problems in which protein secondary structure (SS) prediction is fundamental.
Finally, Emmert-Streib and Mushegian (2007) employ a method for domain identification that uses secondary structure elements as the fundamental units of structure, and they find that it performs equally well to more complicated analyses that include more detailed considerations of protein geometry and structure.
Being fundamental functional RNA elements, many pre-miRNAs have maintained sequence and secondary structure conservation across large evolutionary distances.
Secondary structure prediction of RNA sequences is one of the most important fundamental problems in biological sequence information analysis.
Studies are providing fundamental insights into the nature of these topological constraints, how they are encoded by the RNA secondary structure, and how they interplay with other interactions, breathing new meaning to RNA secondary structure.
secondary structure.
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