Our USB-based TCP contains a mini Web server, developed in-house, that contains sufficient functionality to process SOAP formatted HTTP request/response messages.
In addition, MATLAB comes with a variety of clustering algorithms and lots of functionality to process microarray data like Affymetrix GeneChip, ImaGene result, SPOT, Agilent microarray scanner, GenePix GPR or GAL files as well as Gene Expression Omnibus (GEO) data.
The 'Risa module', available since BioConductor release 2.11 (http://www.bioconductor.org/packages/2.12/bioc/html/Risa.html), includes functionality to process mass spectrometry data relying on the XCMS package (17), and provides methods to save analysis results back to ISA archives, therefore allowing data provenance tracking at the source, while reducing the annotation burden on scientists.
Although the WHG is a standalone application designed to process documents, the functionality of the WHG can be integrated into other software applications.
MODAR exploits ROOT's Graphical User Interface and functionalities to visualize and process MCNP simulation results in a fast and user-friendly way.
Moreover, the adjustments in the RVA methodology produced process cheese with functionality similar to process cheese produced in the BTS.
ParaDockS provides a functionality to analyze, process and store different kind of input structures.
Monitorless, meanwhile, utilizes a pair of clunky glasses that look not entirely unlike Microsoft's Hololens, which content to a PC of smartphone via WiFi, replacing the need to look directly at a monitor, while bringing AR and VR functionality to the process for added immersion and gaming applications.
We extended the versatile C++ class library by adding functionality to import and process variant call format (VCF -based file formats used in DNA sequencing and SNP calling.
The addition of the currently introduced Illumina module complements ArrayAnalysis.org with functionality to pre-process data from experiments run on the widely used Illumina bead array platform.
