Exact(26)
The gs3 in the 08sg2 background (R498) is loss of function, which was identified by a PCR-based marker based on the functional nucleotide polymorphism in GS3 (Ramkumar et al. 2010), and exhibited a long-grain phenotype (Fig. 5a, Additional file 1: Figure S13B, D).
A functional nucleotide polymorphism (FNP) of TAC1 was only found in the japonica rice group.
With respect to xa5, a multiplex-PCR based functional marker system, named xa5FM, consisting of two sets of primer pairs targeting the 2-bp functional nucleotide polymorphism in the exon II of the gene TFIIAɤ5 (candidate for xa5), has been developed.
Functional nucleotide polymorphism.
Fengaizhan 1. Functional Nucleotide Polymorphism.
Additionally, PCR products containing functional nucleotide polymorphism (FNP) or putative FNPs for yield-related genes were sequenced.
Similar(34)
We have shown that ultradense polymorphism data can be used to accurately detect functional nucleotides in the human mitochondrial genome, potentially at the level of the individual base pair, while sidestepping limitations of phylogenetic approaches.
Conservation from greater evolutionary distances may improve discriminative power in identify functional nucleotides, but with the potential trade off of detecting a smaller set of conserved alternative splicing events [ 29].
The above series of analyses was repeated by using potentially non-functional nucleotide sequences.
This suggests a predominantly neutral model of gene rearrangements, where non-homologous recombination is approximately equally likely at each (non-functional) nucleotide.
This can either happen through the deletion of non-functional nucleotides, or through renewed rearrangement of the long regions.
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