We used the EASE (Expression Analysis Systematic Explorer) analysis implemented in DAVID functional annotation tool http://david.niaid.nih.gov/david/ease.htm[ 41, 42] to analyze the candidate genes contained within each module for functional enrichment.
It's a browser plugin – most functional with Firefox but also available for Internet Explorer – that lets end user create their own mashups on top of existing websites.
Subsequent data analysis was performed primarily with Spotfire DecisionSite for Functional Genomics software (version7.0) package and its Array Explorer component (Spotfire, Somerville, MA).
Based on our test, SoyDB is fully functional with three web browsers: Mozilla Firefox, Internet Explorer, and Safari, and four operating systems: Windows XP, Windows Vista, Linux (Red Hat), and Mac OS.
At the time of its introduction, the Explorer was a radical new thing and its functional name implied that you could take the vehicle off-road, a message that Ford wanted to communicate.
Several functional categories were significantly over-represented (Expression Analysis Systematic Explorer score < 0.05) in this gene set [ 43], including development, cell cycle, M-phase, morphogenesis and reproduction.
MSIE, Microsoft Internet Explorer MSIE, Microsoft Internet Explorer MSIE, Microsoft Internet Explorer.
We sought to create a universally functional site by accommodating varying web-browsers (e.g., Internet Explorer, Safari), using Adobe Flash ™ in the user interface, and using open source development tools to facilitate flexible site maintenance and support.
The software EASE (the Expression Analysis Systematic Explorer; http://david.abcc.ncifcrf.gov/ease/ease.jsp) was used to obtain functional Gene Ontology (GO) terms for each gene.
Expression Analysis Systematic Explorer (EASE) software [ 32] was used for automated functional annotation and classification of genes based on GO terms available in UniProtKB/Swiss-Prot databases.
