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The genes represented by these probe sets were functionally categorized and compared to the functional categorization for the entire Vitis Genome Array (Fig. 2).
The functional categorization was performed according to biological process, molecular function, and cellular component using Blast2GO software.
Fig. 1 Functional categorization of differentially expressed rice genes.
Open image in new window Fig. 3 Functional categorization of differentially expressed genes.
Among them, proteins of the energy and metabolism groups accounted for more than 65.7% of the total number identified. Figure 5 Functional categorization of the GA-responsive proteins.
Most of the current methods work on some large-sized functional classes selected from functional categorization systems prior to the prediction processes.
Functional categorization showed that SCMV-responsive proteins were mainly involved in energy and metabolism, stress and defense responses, photosynthesis, and carbon fixation.
The functional categorization by the KEGG pathway and gene ontology analysis revealed enrichment of differentially expressed transcripts to various pathways leading to cancer, including the p53 signaling pathway.
Within EASE, three functional categorization systems, viz.
This held true regardless of functional categorization.
Protein Knowledgebase (UniProtKB; http://www.uniprot.org/) was used for the functional categorization of identified genes.
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CEO of Professional Science Editing for Scientists @ prosciediting.com