Sentence examples for functional bin from inspiring English sources

Functional characteristics annotation was also performed according to the Mapman functional bin classification [ 29], allowing the usage of this versatile tool in the visualisation of gene expression data in white lupin.

We compared the distribution of gene functions and found that a large proportion of Arabidopsis (35.5%) and T. salsuginea unigenes (48.9%) could not be classified to any functional bin.

Genes co-selected by transcript metabolite correlation analysis were grouped together and the functional significance of such groups was estimated by calculating the cumulative hypergeometric p value for the probability that a gene group is enriched with a functional bin at a rate higher than chance expectation.

The Wilcoxon Rank Sum test with Benjamini Hochberg P-value correction was used to test whether the observed combined expression values of a functional bin differ from the expression changes as observed for the collection of genes from all other bins.

Functional predictions and Bin Ids were generated by searching a variety of reference databases (currently 6 are available: 3 BLAST-based, 2 reverse position-specific BLAST based and InterProScan) and subsequently evaluating and compiling the search results for each input gene to propose a functional Bin based on the manually curated binning of the reference database entries.

Currently, the primary goals of metagenomic studies are the investigation of the phylogenetic composition of the sample (taxonomical binning, "Who is out there"), the quantitive analysis ("How many are there?") and the prediction of genes and their functions (functional binning, "What are they doing").

In the analysis, the probe-sets on Barley Genome GeneChip were assigned into 35 major functional bins based on their molecular functionalities such as metabolic pathways, signaling pathways and gene families.

When it comes to functional binning, sequences are compared to known protein functions, families and pathways provided by several databases, for example COG, KEGG, PFAM, SEED, STRING and TIGRFAM [19] [24].

Based on a BLAST comparison against a reference database, this tool performs both taxonomic and functional binning, by placing the reads onto the nodes of the NCBI taxonomy using a simple lowest common ancestor (LCA) algorithm or onto the nodes of the SEED or KEGG classifications, respectively.

A total of 1,233 proteins were assigned to functional bins.

MapMan pathway analysis was used to assign differentially expressed genes to functional bins [ 55].