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Fold change difference threshold for the functional analysis was set on 2 (log2 transformed).
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Functional analysis was performed using gene set enrichment analysis (GSEA) version 2.04 [ 27], comparing the limma moderated t-statistic for each probe in a pre-ranked file, against the c2_all collection of gene sets from the Molecular Signatures Database [ 27] version 2.5 with 1000 permutations.
Functional analysis was carried out using gene set enrichment analysis (GSEA) [ 32], and gene ontology (GO) analysis was conducted using WebGestalt [ 33].
All bioinformatic functional analysis was based on gene sets from GO [ 36], KEGG [ 37] and mSigDB [ 38].
The spaces encountered in functional analysis are frequently homeomorphic to the set of extreme points of a compact set, so that our theorem gives a more universally applicable result for functional analysts.
Functional analysis are performed on the target sets of eleven drugs, which are not approved by CTD (see Table 2, drugs in bold italic and underlined bold).
Motivation: Gene clustering and gene set-based functional analysis are widely used for the analysis of expression profiles.
This functional analysis is similarly applied to molecules in a given network generated by IPA for the data set.
(Functional analysis is such an endeavour).
Thus, detailed functional analysis is required.
No functional analysis is achieved.
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