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The collection of calpain substrates from the literature provided the opportunity to analyze the functional abundance and diversity of calpain cleavage processes.
A Principal Co-ordinate Analysis (PCoA) was performed for genera and functional abundance profiles using Bray-Curtis distance measures for genera abundance and Euclidean distance measures for functional abundance using MG-RAST tool.
The high protein sequence identity between Glyma07g08831 and GmSOC1 might imply their functional abundance in soybean flowering.
For higher level functional abundance, KO abundances were summed and distributed evenly when KO's appeared in multiple categories.
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This section covers the justification of the specific Gaussian process model used to model microbial and functional abundances (referred to here as 'features') in the microbiome, and discusses its assumptions, advantages and drawbacks.
Functional abundances were predicted using "hierarchical classification" (Max. e-Value Cutoff: 1e-5, Annotation Sources: Subsystems).
This method for normalizing functional abundances among the samples was applied to all of the BLAST-based functional assignments in this study.
The data for taxonomic and functional abundances were tested for significant differences using a Wilcoxon rank-sum test that was subsequently corrected for Multiple Testing using the Benjamini-Hochberg false discovery rate (q-value).
The method of comparing functional gene abundance with 16S rRNA abundance is used here with caution, given that varying copy numbers of each gene per cell prevents us from discussing the absolute proportion of functional genes within the total community.
Functional pollinator abundance and diversity reflects global ecosystem health.
We examined functional group abundance along a conservation-agriculture gradient in the Lowveld of Swaziland.
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CEO of Professional Science Editing for Scientists @ prosciediting.com