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These databases are extremely useful, as they are also frequently linked to a large body of relevant information concerning taxonomy, biological function, publication, annotation, cross-reference, or even intellectual property.
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This function displays publication trends over the last three decades and allows the identification of neglected areas along with potential areas of expansion.
At the Physical Network Level, we find the physical data plane containing regular and virtual routers connected to form the physical network infrastructure, as well as the physical control plane responsible for the following functions: Resource publication, resource negotiation, resource allocation and provisioning, and resource management.
These details provide useful knowledge about each OxyDB_ID functions and publications.
The queries we use in lines 12 14, 16 17, and 19 21 are not exact, and thus, in this case, we apply a similarity function for each publication retrieved by these queries (lines 22 31).
An interesting question for me was: is there a different function that the publication process could play in helping to galvanize new ideas or new interactions among different fields?
Integrating GOCat in a curation workflow is still an open issue: it is stated that GOCat proposes more accurate GO terms, but these terms are inferred from the whole abstract, then the curator still has to locate the function in the publication and to link the correct GO term with a gene product.
The main limit of GOCat, both observed by reviewers and mentioned in our papers, was the difficulty to integrate it in a curation workflow: it is stated that GOCat proposes more accurate GO concepts, but these concepts are inferred from the whole abstract, then the curators still have to locate the function in the publication and to link the correct GO concept with a gene product.
One of the strengths of this study is that we not only included publications that presented associations between pain and NPS and pain and physical function, but also publications that provide enough information to compute ORs, thus taking full advantage of the available evidence.
In the case of websites, the internet gives access to a huge quantity of information, which may be either too general or non controlled or, worse, misleading due to the substantial "absence of a governing body or authority that serves a gate-keeping function for web publications" mentioned by Borowitz and Wyatt [9] more than 10 years ago.
Authors who refer to specific rice genes of known function in their publications must cite the approved gene full name and symbol, if available, a 'systematic locus ID' from one of the genome annotation centers and, if possible, a GenBank accession number.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com