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Mappability does not change as a function of sequencing technology, but only as a function of read length and the genome the reads are mapped against; And non-hydrolysis and contamination with pre-mRNA are independent of platform as well since they precede the step of deep-sequencing.
They were used to determine the TP rates and assess variations as a function of sequencing depth, the MAF, and the P value obtained with the variant calling software VarScan (table 1).
Cost-efficiency is a critical factor in genome sequencing and is a function of sequencing chemistry, the complexity of the region being sequenced, and the quality of the assembly.
An analysis of SSR frequency/density as a function of sequencing direction indicated that the SSR frequency/density was higher for 5′ EST assembly than for 3′ assembly (Additional file 9: Figure S4).
The first data set was used to test performance as a function of sequencing coverage.
Pearson correlations (r) for the regions are plotted as a function of sequencing depth.
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However, a high-throughput method will eventually be necessary to experimentally validate the functions of sequenced genes.
Table 3 Comparison of code lengths as a function of sequence length.
Nevertheless, they do not have the function of sequence-specific recognition.
Glass transitions of copolymers have been analysed as a function of sequence distribution and their values compared to the theoretical ones derived using Johnston's equation.
This is done by expanding the sequence-energy relation as a linear function of sequence variables, which are fit using training examples.
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