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Most of the sequenced cDNAs were derived from partially edited mRNAs with incomplete editing in the junction between the fully edited and pre-edited regions (Fig. 3 bottom panel).
Such 'non-canonical' editing does not match the pre-edited or fully edited mRNA, and has previously been observed in normal cells [56] [58].
The formation of the A6-D08 Orequiresres the correct alignment of three distinct ORFs encoded by pre-edited, alternatively edited and fully edited A6 at two junctions, one between the pre-edited and edited sequence and the second at the alternatively edited region II (Figure 5B).
Although this analysis cannot completely rule out the possibility that reverse transcription occurred from unedited transcripts, this seems unlikely to have independently occurred for all three genes because the majority of edited sites are found fully edited in surveys of the mitochondrial transcript pool [ 47, 50, 51, 53].
In contrast, repression of KREPA3 Reg allele expression in RKO-A3ZFm2-myc cells resulted in the severe depletion of fully edited A6 mRNA and the accumulation of pre-edited and some partially edited (white arrow) A6 mRNAs.
To assess whether this lower amount of KREPA3 was responsible for the loss of fully edited mRNAs and the accumulation of some partially edited mRNAs, the expression of untagged KREPA3 Reg allele was adjusted in RKO-KREPA3 cells by reducing tet concentration.
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2. Figures have been fully re-edited as requested by Dr Bojan.
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