Textpresso provides indexing of text (including full-text articles and pdfs) using a broad set of terms organized into biological categories, including incorporation of terms from existing ontologies, such as the Gene Ontology.
It was "a necessary condition to obtain the full set of amended terms," Alan Schwartz, Bear's chief executive, said in Monday's news release.
"The substantial share issuance to JPMorgan Chase was a necessary condition to obtain the full set of amended terms, which in turn, were essential to maintaining Bear Stearns' financial stability," Mr. Schwartz said.
"The substantial share issuance to JPMorgan Chase was a necessary condition to obtain the full set of amended terms, which in turn, were essential to maintaining Bear Stearns' financial stability".
"The substantial share issuance to JPMorgan Chase was a necessary condition to obtain the full set of amended terms, which, in turn, were essential to maintaining Bear Stearns' financial stability, Schwartz said.
Compared to the full set of GO terms for all four liver transcriptomes, the conserved set was significantly enriched in 184 terms in the Biological Process ontology, 116 in the Molecular Function ontology, and 65 in the Cellular Component ontology.
For feature selection of GO terms and Pfam domains for the classifiers, chi-square tests were conducted using R on the full set of GO terms and Pfam-A domains, which were then ranked by the p-values from chi-square tests.
Enrichment analysis is always performed on the full set of GO terms annotating the genes and all of their ancestors in the GO graph (i.e., not just informative terms).
The result of these approaches for several parameters is compared to a reference list (gold standard) assumed to be the full set of valid terms for the corpus.
