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To overcome the computational complexity brought about by the fine pillar structure in the regenerator, a porous medium model is used to allow for modeling of a full element.
As such, in order to grant our replacement algorithm access to the full element list, we had to make a few modifications to the source code of Ehcache.
The length of the full element is variable as it depends on the extension of the VNTR portion but it is ∼1000 1300 bp long.
The grouping of the identified transposable elements was based on the full element sequence similarity or 5' and 3' terminal sequence similarity using two approaches: hierarchical clustering and multidimensional scaling (Additional File 2).
In addition, the Australopyrum sequences provide clear evidence of multiple insertions at the same site in the same sequence: the current full element was inserted at the same TA recognition site as an earlier element, which has since been excised leaving a footprint.
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The research deals with both the full elements (without any opening) and with elements containing an opening.
These are completely different features from the conventional FDE methods of which CFR matrix is the full elements of matrix.
In this method, the full elements of CFR matrix is approximated by a banded matrix so as to enable the employment of parallel block inverse matrix algorithm.
However, the BER performance would be degraded in higher time-varying fading channels due to the approximation for the full elements of CFR matrix by the banded matrix.
This feature of time domain CIR matrix for the proposed TDE method is completely different from the frequency domain CFR matrix for the conventional FDE methods of which CFR matrix is the full elements of matrix [3, 7 12, 14].
They use the transposases encoded by the corresponding full elements in trans for their mobility [ 1].
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