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The western flanks of the Interior Lowlands are the Great Plains, a territory of awesome bulk that spans the full distance between Canada and Mexico in a swath nearly 500 miles (800 km) wide.
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Most sequence clustering methods require a full distance matrix to be computed between all pairs of sequences.
Here, we compare the distances derived from LMS with alignment-based distances: distance based on percentage identity between catalytic domains ( = identity distance), distance based on BLOSUM scores between catalytic domains ( = BLOSUM catalytic distance), and distance based on BLOSUM scores between full-length sequences ( = BLOSUM full distance).
On average, there is 1.9% difference in alignment quality between the mBed approach and the full distance matrix computation.
By requesting that a full distance matrix be generated and output, the sequences were clustered using the similarity measures between all pairs of input sequences.
"In Edmonton and New York, we went the full distance.
Full Distance Not straightforward.
GMM for the features is explained in Section 3.1, and Section 3.2 proposes a method for calculating the Euclidean distance between full-covariance GMMs.
Assuming a stepwise synthesis yield for probes of 95% per base and that the density of initiation sites for probe synthesis is 5 × 1017 molecules/m, the average distance between full-length 25 mer probes is about 3 nm.
The top dashed (solid) curve in Figure 4 illustrates trace distance between the full circuit (concatenated ) process matrix to the ideal process matrix, plotted as a function of.
The maximal genetic distance between 2 full-length genotype I strains was 4.3%.
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