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It simplifies everything from the reads the passers must make to the verbiage of the playcalling.
All raw sequences underwent quality filtering procedures consisting in the trimming of low quality nucleotides from the reads.
Nevertheless, MAQ offers a very simple program that aims to recover indels from the reads that had to be aligned using the Smith-Waterman algorithm.
Values from the reads were averaged.
First, adaptor contamination was removed from the reads.
Afterwards, all ambiguous (N) bases were trimmed from the reads.
SGA [ 15] was used to generate contigs from the reads.
A total of 596 contigs were assembled from the reads.
Primer, MID and ribosomal RNA sequences were trimmed or removed from the reads.
With the information obtained from the reads, no alternative splicing could be observed.
Possible adapter sequences, based on the Illumina TruSeq Adapter index sequences, were removed from the reads.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com