Sentence examples for from the entire alignment from inspiring English sources

A few of our codon alignments contained multiple segments (i.e., recombination) as analyzed by GARD [ 87], therefore the base frequencies and substitution rates obtained from GARD were inferred together from the entire alignment, while branch lengths were fitted to each segment separately.

The likelihood for the entire alignment is a function of π with 19 variables.

Each time a taxon was added or removed from the dataset, the entire alignment and Gblock trimming process as described above was repeated, followed by phylogenetic analyses.

The 17 areas where 6 sequences from F10 resembled the majority of sequences from F9 were found across the entire alignment and ranged from 1 3 nucleotides in length.

In 1946, however, PA 37 was realigned to follow the entire alignment of PA 434 from US 6 to New York, decommissioning PA 137 in the process.

This remained in place for only two years, and when the Pennsylvania Department of Highways redesignated highways across the entire commonwealth, the alignment of the U.S. Route 220 portion was redesignated as U.S. Route 111, while the entire alignment of Route 287 from the Larrys Creek to Tioga was redesignated as Route 84.

It can be noticed that while genes from clade C are quite homogeneous in their clustering pattern across the entire alignment, others are more mosaic.

Initially, the entire alignment procedure takes 4-6 h to perform; periodic fine-tuning of the system takes 1-2 h.

The entire alignment of PA 646 was paved in 1930.

By 1947, Route 3 had been designated along the entire alignment of current Route 120.

Overall, the multiple sequence alignment revealed 79% sequence identity between all species over the length of the entire alignment.