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In several cases, failure to amplify loci resulted from the loss of the C locus, as confirmed by genome sequencing and southern hybridizations using the repeat sequence from that locus as a probe (data not shown).
At each gene locus, we define a universe U of all unique nucleotides in all exons transcribed from that locus.
For each locus, any position included in any transcript deriving from that locus was included in the list of exonic positions for that gene.
About 19% of env cDNAs were derived from provirus c7_A whereas only 3.5% of gag cDNAs were derived from that locus.
For each gene locus, we counted the frequency of Pbx-Hox KR motifs in the associated CNEs and compared this to the average frequency in 1000 sets of randomised versions of CNEs from that locus.
While in mamma-CA no gag cDNA was derived from provirus c3_C, approx. 27% of gag-derived cDNAs and 10% of env-derived cDNAs were from that locus in normal breast tissue.
Similar(50)
Under Wright's model, this parameter is specific to each population j but remains homogeneous over loci so that any departure from that property may indicate that locus i is no longer neutral.
This experimental design, however, does not exclude the possibility that loci distinct from EXPB1 could account for our results.
Seurat iterates through each nucleotide in the reference sequence and examines any evidence from aligned reads at that locus.
Furthermore, we required that the aligned reads should have MQ ≥ 30 and at least 10 reads should be aligned at that locus from more than one sample.
It can be seen from the locus that the material separation proceeds due to the variance in the horizontal velocity induced in the individual materials.
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