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Consequently, it is possible to generate rules directly without scanning all frequent sequences for prefix checking.
The number of cytosines in the 7-bp tract varied from 6 to 13 and the most frequent sequences for the D310 region are C7TC6, C8TC6 and C9TC6.
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A consensus sequence (the most frequent sequence) for each conserved sequence in the alignments was generated for each of the 6 subgroups.
To assess IRES sequence conservation across HCV isolates, nucleotide sequences of 45 clones from 9 HCV subjects were determined (and the most frequent sequence for the clones that belongs to each subject was selected) and the sequences that constitute the target domains for S-ODN1 and S-ODN2 were aligned using multiple sequence alignment programs ClustalW.
A sequence mining algorithm can extract frequent sequences from a corpus.
Numbers of low frequency single nt mismatch sequences for the 20 most frequent sequences in each sequencing cohort were tallied for each cutoff value.
In this paper we present a novel approach for mining frequent sequences, called Prism.
Via an extensive evaluation on both synthetic and real datasets, we show that Prism outperforms popular sequence mining methods like SPADE [M.J. Zaki, SPADE: An efficient algorithm for mining frequent sequences, Mach. Learn. J. 42 (1/2) (Jan/Feb 2001) 31 60], PrefixSpan [J. Pei, J. Han, B. Mortazavi-Asl, H. Pinto, Q. Chen, U. Dayal, M.-C.
In this paper, we study the problem of designing a differentially private algorithm for mining maximal frequent sequences, which can not only achieve high data utility and a high degree of privacy, but also provide high time efficiency.
The study in [18] has proposed a method for generating a complete set of sequential rules from frequent sequences and removing redundant rules in the post-mining phase.
For example, Fig. 1 shows the prefix-tree of frequent sequences.
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