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Interestingly, the mutation frequency of transcripts in the tumour tissues of patient A differed from the others and, in particular, from the mutation frequencies of its corresponding genomic regions.
Frequency of transcripts per binned log transformed FPKM + 1.
For the up regulated genes an increased frequency of transcripts originating from preadults was evident.
In addition, a high frequency of transcripts that have just few nucleotides in their 5′ untranslated region, reported in M. pneumoniae, was also seen in M. hyopneumoniae.
For lncRNAs positively correlating with their associated protein coding genes, compared to all differentially expressed lncRNAs, the frequency of transcripts activated by 6 h increased 2.2-times, while the frequency of transcripts activated by 120 h and 24 h decreased 2.0- and 1.6-times, respectively.
The significance of these trends was confirmed by a comparison of the transcript frequency in the top 200 statistically most altered transcripts with the frequency of transcripts in each cluster.
Similar(52)
This includes two different samples of Arabidopsis accessions, a detailed comparison of abiotic and genetic variation within two accessions, and the frequency of transcript accumulation polymorphisms that cause eQTL.
GO annotation [ 46], using Blast2GO (http://www.blast2go.com/b2ghome) [ 47, 48], was performed to compare the four transcriptomes with regards to the frequency of transcript-associated GO terms.
The alternative transcription rates among multi-exon genes for soybean and Arabidopsis were 25%and26%6% respectively; these rates were similar to blueberry, indicating that the frequency of transcript variation found in the blueberry gene models was reasonable and not likely to be an artifact of incorrect transcript model assembly.
This function is used to normalize frequencies of transcripts in relation to library sizes.
Linear amplification has been shown to retain the relative frequencies of transcripts with reasonable fidelity over a wide amplification range [ 7- 10].
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CEO of Professional Science Editing for Scientists @ prosciediting.com