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If the frequency of segments of each order is then tabulated, it can quickly be seen that for any stream system, the frequency of segments increases with decreasing stream order.
However, with this approach, any LOH regions in the cell line would result in the absence of identified heterozygous positions; thus, we adjusted to zero the B allele frequency of segments with fewer than three heterozygous positions per megabase.
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The haplotype approach cannot be applied without some native and exogenous pure individuals to evaluate the frequencies of segments in both original populations.
The frequency of chromosome segments exceeding 7 cM was determined for each scenario and compared, using a Chi-square test, to the frequency of 7 cM segments observed among 48 chromosomes sampled from albino axolotls.
The relative frequency of matching segments can be seen in Fig. 2. A confusion matrix is provided in Table 2 and per-class accuracies and reliabilities, along with their confidence intervals are shown in Table 3.
However, in some cases, homologous sequences displayed variations in the frequency of disordered segments.
The identity and frequency of gene segments or combinations define antibody repertoires.
In fact, for most chromosomes positive correlations between the frequency of disordered segments of 30+ amino acids and both recombination rates and G + C content were observed.
For that, the empirical recombination rates reported for 5 chromosomes of A. thaliana and 12 chromosomes of O. sativa (see Methods) were scatter-plotted versus the frequency of disordered segments calculated on those regions.
Nevertheless, this hypothesis was tested by plotting the frequency of disordered segments of these A. thaliana and A. lyrata orthologous proteins versus the recombination rates of the corresponding chromosome fragments.
Using 'b' < 0.6 to indicate taurine origin, the estimated frequency of indicine segments in B. taurus breeds was 0, as expected, 98% in Brahman, and 71 to 83% in composite breeds.
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