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To calculate the frequency of consensus miRNA sequences within targets, genes containing an annotated 3'UTR longer than 30 bp (i.e., long enough for miRNA binding) were scanned using the Drosophila miRNA database constructed by Enright et al [36].
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The frequencies of consensus haplotypes are significantly higher than the other haplotypes (Additional file 4).
These methods have allowed the quantitative detection of frequencies of consensus to alternate SNP bases at any particular SNP locus.
We checked the frequency distribution of consensus modules to ensure that no biases were introduced by specific combinations of experiments and more specifically by the Park et al. dataset which generated the majority of the combinations.
Conservation of a position, x, is defined by the frequency of the consensus amino acid.
However the frequency of this consensus sequence in the genome is much higher than the frequency of mA occurrence, therefore additional sequences or RNA structures may also play a role in determining the methylation sites.
Comparison of the cumulative frequency of the consensus PAS relative to the transcription start site (TSS) reveals PASs accumulate more rapidly upstream than downstream of a set of 3,309 strict TSSs.
Additionally, we used the software program "consensusCounter" (Additional file 3: TomatoProgramCode zip file) to determine that the frequency of the consensus motif in all peaks was 1.45 × 10-2 (Additional file 6: Data set 4) compared with the 2.64 × 10-4 frequency (50-fold difference) expected by chance using the 33.2% GC content in the tomato genome [ 27].
Respondents were queried about their frequency of use of consensus guidelines for diabetes management in their practice.
Given that mice have been used extensively as genetic models to study nuclear receptor signaling (e.g. [ 19]), we compared the frequency and distribution of consensus direct repeat response elements [RGKTCAniRGKTCA, i = 1 to 5] both in the mouse and human genomes (Table 1).
The frequencies of the consensus haplotypes are much higher than any species specific haplotypes, suggesting that the consensus haplotypes were derived from multiple homologous chromosomes.
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