Sentence examples for frequency of alignment from inspiring English sources

Lutz and Gutmann (1995)'s method for lineament identification (Two Point Azimuth: TPA) is based on the azimuth between each sample and every other sample and provides a distribution of the frequency of alignment angles, usually presented within groups of 10° intervals (Connor 1990; Wadge and Cross 1988).

Data for comparing the frequency of alignment gaps and mismatches (i.e. gaps per kbp and mismatch per kbp) in different de novo assemblies were generated with bootstrap resampling (n = 1,000) using MATLAB.

The probability that an alignment would have complete ORFs by chance was determined from the frequency of alignments with complete ORFs in the parametric simulation.

Cells cultured on substrates with smaller pitches exhibited a substantially higher frequency of cell alignment and smaller circularity index.

The frequency of multiple alignments at the isoform level is increased because many reads align to shared exons in multiple isoforms of a gene (Table S1).

In this study, we employed several methods to minimize the frequency of incorrect alignments.

Sequence fragments are then mapped to a reference genome and the frequency of these alignments is used to estimate the expression of each gene [ 2].

A comparison of the frequency of sequence alignments, determined by MegaBLAST, between rice coding sequences in TIGR pseudomolecules and annotations vs 4.0 and comprehensive transcript-assembly and methylation-filtered databases from Lolium perenne (ryegrass), Zea mays (maize), Hordeum vulgare (barley), Glycine max (soybean) and Arabidopsis thaliana (thale cress) was undertaken.

The program phyloFit was applied to generate the tree and branch length, after adjusting the frequencies of the alignment back to a genome-wide GCpercentt of 0.41.

However, because a high frequency of low significant alignments may reveal stretches of ancestral regions, we used a low-stringency BLAST strategy to include alignments beyond a significant similarity, a key step in our strategy to identify putative coding sequences with a biological and/or evolutionary significance (Fig. 1).

Their model also predicts that SF alignment depends on stretch magnitude and frequency, although the extent of alignment does not saturate at 1 Hz.