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Again, the initial frequencies are based on the inverse of the first inter-spike interval due to a one second current step, and the final frequencies are based on the last inter-spike interval.
The estimates of haplotype frequencies are based on the log-likelihood function L Θp|M), whereas the estimates of diplotype genotypic means and residual variance are based on the log-likelihood function L Θp, Θq | y, M).
Results from LS possible at higher frequencies are based on sampling only the short intervals, and are not appropriate when it is not known whether a signal is time-translation independent.
Whole-genome codon frequencies are based on the whole sampling universe so that a sampling variance is counterfactual and negligible anyway given that i) most datasets contain 12,000 genes or more, i.e., millions of codons, and that ii) each "average motif preference" is based on tens of thousands of individual-gene motif preferences.
The frequencies are based on genotypes of animals from both herds including the sows.
The codon frequencies are based on overlapping trinucleotide frequencies in open reading frames predicted for all genomes.
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*Expected frequencies were based on results from a previous run where the samples were undiluted.
Descriptive statistics was used in which all frequencies were based on the number of valid responders.
Expected nucleotide frequencies were based on a 38% GC content and a 62% AT content.
These allele frequencies were based on allele counts, rather than genotype counts (equal weighting for genotyped individuals).
The latter can be explained by the expected frequencies being based on G-rich substrings that are themselves underrepresented in these species.
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