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Based on the qualitative text analysis a framework for reaction patterns was developed, comprising eight main categories: (i) interest, (ii) satisfaction, (iii) reassurance and trust, (iv) activation, (v) disinterest, (vi) dissatisfaction and disappointment, (vii) anxiety and worry, (viii) doubt.
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Based on the stoichiometry of the considered reactions, flux balance analysis (FBA) has provided the basic framework for investigating reaction fluxes in a metabolic network (Edwards and Palsson, 2000; Kauffman et al., 2004; Lee et al., 2006; Varma and Palsson, 1994).
The decomposition of complex metabolic networks into elementary flux modes (EFMs) provides a useful framework for exploring reaction interactions systematically.
The SSA is a general framework for simulating biochemical reaction systems.
The STM approach contains a framework for rationally incorporating reaction rates, protein concentrations and interaction stoichiometry should these become available.
In this talk I will outline a novel theoretical framework for analysing metabolic reactions and how they are catalysed by enzymes.
The model is based on the thermodynamic framework for adsorption exchange reactions developed by Gaines and Thomas (1953. Journal of Chemical Physics, 21, 714 718).
We have developed URDME, a flexible software framework for general stochastic reaction-transport modeling and simulation.
Flux balance analysis (FBA) [ 162],[ 163] is a framework for computing steady-state reaction rates in such networks based on reaction stoichiometry, assuming the cell attempts to achieve some objective such as maximum growth.
(22) As a prerequisite to determine the extent to which, and when during the reaction, each interface contact contributes to recognition, we previously established a kinetic framework for analysis of the reaction.
A complete kinetic and thermodynamic framework for the AAG-catalyzed reaction has been reported, but much less is known about AlkA.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com