Sentence examples for fraction of variant from inspiring English sources

A fraction of variant sites was found as homoplasmic in any samples and heteroplasmic in others.

To investigate the role of variant frequency, we examine the fraction of variant sites discovered by Thunder as a function of frequency and compare with the variant sites discovered by multi-sample Unified Genotyper.

In addition to overall concordance, we examined the false positive rate for each sample and genotype caller, defined as the fraction of variant sites for that sample called with at least one non-reference allele by the genotype caller that are homozygous reference on the Exome Chip.

However, this only occurs for a fraction of variants.

Therefore, a relevant fraction of variants are involved in breast cancer through splicing alterations.

The fraction of variants with a Bayes factor < for fixed dispersion ρ is shown in Figure 2a.

As a control, a fraction of variants were sequenced using the ABI Prism BigDye Terminators and the ABI Prism 3100 sequencer (Applied Biosystems).

From looking at specific examples it appears that only a small fraction of variants get an incorrect annotation from both software tools.

These scenarios are equivalent, as Eq. 6 also quantifies the expected fraction of variants that will be found in the project.

The excess of derived low-frequency variants is E = [100 × (fr – fn)]/ fn where fr is the fraction of variants in the region of interest (with-indel or no-indel fragments) that have a derived allele frequency (DAF) below a given cut-off, and fn is the fraction of variants in the neutral reference with the same DAF cut-off (Mu et al. 2011).

Although it is well accepted that each cancer sample is different and only a small fraction of variants are recurrent, we show that with mutations recurring more than 30 times (53 variants) explains a comparatively large fraction of patients (~40%).