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Both Carnosauria and Allosauroidea are found to be monophyletic, with a relatively high Bremer value of 4 recovered for Carnosauria.
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However, in all molecular phylogenies computed so far, the clade containing both downy mildews and Phytophthora was found to be monophyletic, often with maximum support [15], [10].
The Rogadinae and Lysiterminae were also found to be monophyletic, though with weak support (PPs = 0.35 and 0.75, respectively).
All orders were found to be monophyletic, including Mecoptera with Siphonaptera as its sister group.
Gymnoscopelini (clade C) sensu Paxton [ 3] was found to be monophyletic although not fully congruent with Ahlstrom et al. [ 88].
All genera with more than one included species were found to be monophyletic except Andamia and Salarias.
The class Demospongiae as traditionally defined is not found to be monophyletic.
Thaumastodermatidae has been found to be monophyletic based on morphology by Hochberg & Litvaitis [18], [30] and Kieneke et al. [19].
Phylogenetic trees revealed that the lys2 genes are monophyletic; on the other hand, bacterial antibiotic/peptide synthase genes were not found to be monophyletic.
Of these, sections Americanae, Ervum, Faba, Narbonensis, Peregrinae, and Trigonellopsis are found to be monophyletic.
Surprisingly, mouse Abpa and Abpbg genes were found all to be monophyletic with respect to families of orthologs from either rat or wood mouse (Apodemus).
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