PRODIS is designed to store general information on projects and experiments, LC data from the AKTA Explorer 100 (Amersham BioSciences) HLPC system, 2D-PAGE data generated using the Image Master 2D-Platinum system (GE HealthCare), m/z files from MS (mzXML, pkl, mzML and mzData formats) and identification files from Mascot, X-Tandem and OMMSA runs.
These authors found that only 51%, 33.6%, and 46% adhered to standards on guideline development and format, evidence identification and summary, and formulation of recommendations, respectively [ 14].
With more than 50 motor vehicle agencies regularly changing their license technology every four or five years, there are more than 200 valid license and identification formats in the United States.
Integrator produces an output file (in JSON format) containing mass spectrometric and identification information and the adequate structure to be uploaded to the LymPHOS database.
PIQA reads data in the bustard, fastq and scarf formats and eases the visual identification of technical problems, including mistakes in sample/library preparations, defective tiles/ lanes and abnormalities in the frequencies of appearance of genomic reads.
Publicly accessible data available through genome browsers significantly enhances the utility to investigators of ENCODE, FANTOM5 and other datasets that allow functional annotation and interpretation of regulatory variants, while tools integrating datasets in a searchable format further enable hypothesis generation and identification of putative regulatory variants (Table 1) [ 39, 47, 48].
These scripts specifically convert the standard BLAST output into a tabular format and allow the identification of pairs of inverted repeats at approximately 2.5 Kb from each other (i.e. the average distance between TIRs of Tc1/mariner elements).
The 50 bp sequence reads were aligned to the rat genome (rn4; NCBI build 4) using the MIRO pipeline (Centre for Genomic Regulation, Barcelona, Spain) allowing 2 mismatches, and aligned tags were converted to BED format and used for identification of binding sites.
In terms of response formats, we employed identification and discrimination (e.g., Young et al., 1997) tasks for the categorical strategy and the Affect Grid (Russell, Weiss, & Mendelsohn, 1989) for the dimensional strategy.
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