Sentence examples for format was processed from inspiring English sources
The data produced by MetaMap (XML format) was processed through a PERL script to extract the inputted text and its corresponding meta-mapped CUIs.
Image files in DICOM format were processed with an automated processing stream written in MATLAB (Natick, MA, USA) and C++ by the UCSD Multimodal Imaging Laboratory.
Uncompressed images in Bitmap format were processed in a custom-created computer program.
Sequence reads in fastq format were processed using our internal RNA-seq pipeline.
The raw sequencing reads in BCL format were processed through CASAVA-1.8.2 for FASTQ conversion and demultiplexing.
WGS data in fastq format are aligned to reference genomes by BWA while contigs in fasta format are processed by Nucmer.
DASH data generated by the DNA sequencer (.fsa file format) were processed in DASHboard software, which was written and developed using MATLAB Mathworks Incc).
MEDLINE records from 1994 to 2006 from the National Library of Medicine in Extensible Mark-up Language (XML) format were processed yielding 10,208 URL addresses.
The resulting sequence trace files in ABI format were processed with pregap4 (Staden package), using the phred base calling algorithm [ 36].
Illumina sequence reads in FASTQ format were processed to remove low quality and artifactual reads, trim Illumina adapter sequences with the fastx_toolkit.
The TBLASTN searches result lists, previously saved in tabular format, were processed so that overlapping hits on the same strand were merged using a custom made Java program (available upon request).
