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TM4 has its own file format, the mev file format.
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There is a converter that transforms into the mev format data from Genepix, ImaGene, ScanArray, ArrayVersion and Agilent files.
The dye-normalyzed values generated in the Feature Extraction data files were used to upload the software Express Converter (version 2.1, TM4 available at http://www.tm4.org/utilities.html) which conveniently converts the Agilent file format to mev (multi experiment view) file format compatible to the TM4 softwares for microarray analysis (available at http://www.tm4.org/).
BSR T7/5 cells (5×105/well) were transfected with plasmid DNAs encoding MeV-L (0.24 µg), MeV-N (0.94 µg) or MeV-P (0.29 µg) and 2 µg of the MeV luciferase minigenome reporter plasmid [83].
The MEV Jlin/2010, MEV-SDNH, MEV SD07/09, and MEV SD12/01 strains were classified into a small MEV clade, named the China type, in the FPLV/MEV cluster.
Heat maps were created using the MeV software.
Cluster analysis of the complete MtGEA dataset was performed using the MeV software package (http://sourceforge.net/projects/mev-tm4/).
All other parameters were set to the MeV defaults.
Samples were clustered using the MeV program [ 91].
The dye-normalized values generated in the FE data files were uploaded into the software Express Converter (version 2.1; TM4 platform available at http://www.tm4.org/utilities.html), which converts the Agilent file format to a mev (multi-experiment viewer) file format compatible with the TM4 software for microarray analysis (available at http://www.tm4.org/).
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