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With most of our music now in a digital format, neatly contained on our mobile phones and iPods, many of us have no doubt got lots of old CDs stacked up in garages, waiting to become miniature frisbees or coffee coasters or museum relics from a bygone era.
The bisulfite sequence tracks in UCSC genome browser format are available on our website (http://people.cgb.indiana.edu/jeochoi/methylation). The source code package with documentation is available online at http://sourceforge.net/projects/bsmapper.net/projects/bsmapper
The results are presented as files in SBML format (.xml) available on our website http://www.sysbio.se/users/Subir.sysbio.se/users/Subir
We can multiplex both the SPE and LC columns, for example, to a 24-plex format as demonstrated on our 24-plex MEA chip, for high-throughput and multiomics including metabolomics, bottom-up proteomics, and top-down proteomics analysis of biofluids.
Detailed explanations and documentation of available parameters and file formatting are available on our website.
The XML and text formats are documented on our web site, and are also currently supported by iMAS (icrisat.org/bt-biomatrics-imas.htm), QU-GENE (Podlich and Cooper, 1998), Gramene (Liang et al., 2008), Genstat (vsni.co.uk/software/genstat) and The Hordeum Toolbox (hordeumtoolbox.org).org
