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Finally, the shared task expected output format is generated by 'BioC output generator'.
First, using just classes.dex from the original APK file, another classes.jar in the APK file format is generated.
The fragments are organized systematically in separate folders according to the compound of interest, and a 2D chemical structure image file in.png format is generated for each fragment.
Based on the standard concentrations, the signals were directly translated to ng/μl in an.xls file and electronically provided for the pooling process, an additional report with quality control checks in.pdf format is generated.
For every sequencing run a detailed report (.pdf format) is generated using a Java-written module summarising most important run performance parameters and quality information (see Additional file 4).
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MS/MS peak lists in Mascot Generic Format were generated using extract_msn.exe and DTASupercharge (ver. 1.17, default settings) and searched with Mascot using IPI human ver.3.32 (http://ebi.ac.uk) with a concatenated decoy database containing randomized sequences from the same database [56].
Then, rainfall forecasts in numerical format are generated according to these real-time weather conditions.
A cored trabecular specimen from a human lumbar vertebra was μCT scanned and a three-dimensional, virtual model in stereolithography (STL) format was generated.
MSAs in block format were generated using WAVIS server (http://wavis.img.cas.cz) [55].
Cross sectional images (DICOM format) were generated from the projected CT images using Nrecon (Skyscan, Belgium).
Reads in FASTQ format were generated using a Illumina Casava pipeline (version 1.8.3).
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