Sentence examples for format assembly from inspiring English sources
For SSR and SNP detection, EST sequences were clustered with CAP3 using default parameters and the resulting ".ace" format assembly file was fed into the corresponding programs.
These lists were used to call pileup information from the corresponding BAM format assembly file in regard to the opposing read group using the SAMtools pileup program by switching off the variant filtering option.
The traces identified by these searched were downloaded in.scr trace format for assembly into contigs.
SmashCell also uses generic databases to provide a common format for assembly and gene prediction information, allowing it to work with a variety of third-party assemblers and gene prediction algorithms.
In this work, the global stiffness matrix is stored using the coordinate list (COO) sparse storage format during matrix assembly.
Mouse sequences were obtained from NCBI ftp site in FASTA format: two WGS assemblies for projects AAHY and CAAA [ 73]; the reference genome assembly build 37.1 and Celera genome assembly build 37.1 [ 74]; MGSC genome assembly release 3 [ 75].
MATTATHIAS SCHWARTZ: It will be interesting to see *where* and *how* this question gets answered — it may not be through the general-assembly format, and it may not be in Zuccotti Park.
Should we consider assembly formats with an interdisciplinary approach as a form with which to govern?
The FASTA-formatted mitochondrial genome assembly for M. vitrata was used in a query in the National Center for Biotechnology Information (NCBI) non-redundant nucleotide database (nr) with the blastn search algorithm [33].
Tablet can import data from ACE, AFG, MAQ and SOAP assembly formats (with preliminary support for SAM), and can handle both 454 and Solexa data.
Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any region of interest, and whole contig overviews and data summaries.
