Exact(4)
Both MP and ML underestimate the numbers of changes and the underestimation is greater for MP inference, especially for up changes at high MCU.
In the absence of selection (MCU ≈ 0.5), parsimony underestimation is greater for the more common pu changes than for up changes.
For a given ECC, ancestral reconstructions are assigned probabilities according to equilibrium expectations given the base composition of the extant sequences; rate parameters are biased upward for up changes and downward for pu changes.
Figures 3C and D depict the ratio of inferred to actual numbers of changes and show that, for both methods, underestimation decreases with MCU for pu changes and increases with MCU for up changes.
Similar(56)
She could no longer blame the Social Democrats, her previous coalition partners, for holding up changes.
For him, being runner-up changes everything.
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The conductors are able to make change for up to $20 bills.
Past explanations have included blaming China for making up climate change for their benefit.
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