Sentence examples for for these two alignment from inspiring English sources

The current implementation of AlignGraph uses Bowtie2 and BLAT for these two alignment steps, respectively (Kent, 2002; Langmead and Salzberg, 2012).

For each of these three alignments, we estimated a phylogeny using the following procedure.

(g, h) Plots of the path of the projected global center of mass along the y-axis for the two alignment methods.

(i, j) Plots of the path of a center of mass along a single cross-section of the projections for the two alignment methods.

The best-fitting trees for the two alignments were then used in subsequent analyses.

Cumulative Relative Entropy (CRE) calculated for these two sets of alignments enabled us to selectively identify conserved residues of not only CaMdr1p but for the entire DHA1 family.

We then calculated C for the four alignment-free sequence comparison methods.

The disagreements between Galinter and I2I-SiteEngine for S/D-homologous interfaces arise mainly from group 10, and also to a lesser extent, from the smaller group 4. Interestingly, for these two groups, the Galinter alignments agree with those based on DaliLite.

In Figure 5 we demonstrate the alignment for these two homologous proteins EJY57625 and ABF18239 and peptides identified in each of those two proteins.

Initial sequence alignment for these two systems was performed with the Clustal-W program [ 22], using the Blosum 30 substitution matrix, a gap-opening penalty of 10 and a gap-extension penalty of 0.1.

Generate p2align for power of two alignments because this directive is more portable than.align.align