Sentence examples for for the two alignments from inspiring English sources

The best-fitting trees for the two alignments were then used in subsequent analyses.

The topologies of the trees obtained with Bayesian probabilities for the two alignments and those obtained with ML in Garli were either identical or compatible with each other (i.e. consensus consistent with resolved nodes).

The estimated parameters for the two alignments were within the 95% confidence intervals of each other, with the single exception of alpha of the SSU and LSU partitions, and the probability of invariant sites (I) of the LSU partition (Additional file 2).

Next, Spial decides whether there are amino acids that are specific for one of the two alignments, but not for the consensus.

For each scoring function, the better score of the two alignments for each pair is highlighted in bold.

For the phylogenetic analyses of the two alignments, the same methods were applied independently.

It selects the better of the two alignments for the same region in the genomes and therefore effectively applies the most appropriate blast program automatically on protein coding and non-coding regions.

The aforementioned Bayesian method was used to infer phylogenetic relationships for each of the nine alignments generated.

Alignments of mRNA and gene sequences (first translated into protein sequence) are presented in Additional file 5. Identity scores are superior to 99.9% for each of the three alignments.

Lineage-specific rates of substitution were then calculated for each of the four alignments with BASEML, with the same model settings as previously described, and a set species tree topology [ 90- 92].

(g, h) Plots of the path of the projected global center of mass along the y-axis for the two alignment methods.