Sentence examples for for the prediction and annotation of from inspiring English sources

During this study, and using the whole goat genome that has recently become available [ 18], three strategies were compared for the prediction and annotation of miRNA.

For the prediction and annotation of mouse tRNA genes, the strategy to counter this problem was to identify SINEs that have been predicted as tRNA genes and use comparative genomics to identify functional tRNA genes [ 16].

In the present study, we have developed an updated computational approach for the prediction and annotation of ES proteins using NGS transcriptomic data overcoming the limitations of the earlier EST2Secretome pipeline.

Prediction and annotation of transposable elements in the pig genome showed over representation of tRNA derived TE, with approximately 2.2 million copies accounting for 12.4% of the genome.

Prediction and annotation of non-protein-coding genes.

Our strategy to allow partial open reading frames and improved secreted protein predictions in eukaryotic transcriptomes provides valuable tools for the analysis and annotation of eukaryotic genomes.

For the gene prediction and annotation we used the V2.1 version (URL: http://genomes.cribi.unipd.it/DATA/V2/V2.1/) [ 28], up-to-date at the time of the analysis, for which is available also a functional annotation.

MAKER (v.2.28) [ 71] was used as the main annotation pipeline for gene prediction and annotation.

The ORF prediction and annotation for each scaffold were performed as described in the analysis of fosmid end-sequences.

While both transcripts and genomic sequences were used for molecular marker predictions, gene annotation of the genomic sequences was not performed because the intron-containing genomic sequences were too short for informative gene prediction and annotation.

Using SIPHT, predictions and annotations of putative sRNA-encoding genes were conducted in 932 bacterial replicons yielding 45,599 candidates for previously unannotated intergenic loci.