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Different approaches for the parallel implementation will be presented and evaluated in this paper.
However, SLT without the in-place algorithm is not suitable for the parallel implementation, and the matrix formation and algorithm design of SLT lack universality, either.
The message passing paradigm is used for the parallel implementation of the domain decomposition algorithm, allowing the solver portability on different parallel platforms.
We describe the design and implementation of efficient parallel algorithms, and a software library for the parallel implementation of compressed octree data structures.
This paper supplements previous work done by Gopalakrishnan and Tafti [21] for the parallel implementation of the Discrete Element Method (DEM) in the open source code Multiphase Flow with Interphase eXchange (MFIX) for distributed memory architectures using MPI.
For the parallel implementation of solving tridiagonal linear equations, there are totally three communications shown in Figure 1.
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The results indicate that for large problems a single GPU is up to 45 times faster than a CPU for this application, and the parallel implementation shows linear speed up on up to 4 GPUs.
A grid generation software system – Parallel Multiblock Adaptive Grid generation (PMAG) – using an elliptic redistribution scheme is also described with emphasis placed on the parallel implementation for multiblock structured grids with unstructured blocking topologies and on interpolation issues.
Xiaoguang Liu and Gang Wang (College of Information Technical Science, Nankai University) for help with the parallel implementations of the GPU MrBayes program.
The growth rate of execution time corresponding to increasing input size is lower for the proposed parallel implementation than the serial version.
Figure 4 shows the speedup for the three parallel implementations using the six traces over serial Myers algorithm.
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