Sentence examples for for the given read from inspiring English sources

For each read we selected the set of genomic matches having maximal identity for the given read.

At the beginning, all primers are considered to be equally probable matches for the given read and hence assigned a probability of pprimer = 1.

Only the perfectly matched alignments for the given read were kept and extended to 35 nt to 36 nt by adding 15 nt of upstream sequences.

The assumption of a search for overlap between the 3' end of the given read and the 5' ends of the remaining reads was assumed when calculating ps.

The intersection process also requires the positions in each position list to be adjusted at run time for its location in the given read, so they correspond to the diagonals in an alignment matrix between genome and read.

Also, the option "-k1" was elected, i.e. if in the course of the search Bowtie found 2 (or more) possible alignments for a given read, the program selected one of the alignments at random.

For a given read, the best stratum consists of the alignment(s) with the fewest mismatches.

Recall from Section 2.3 that the labels of the irreducible edges for a given read are prefixes of the labels of transitive edges.

The k-mer classes that occur for a given read determine the classification of the read as a whole according to the following function: The read classes graft and host denote cases where there is at least one k-mer which unambiguously comes from that k-mer class, and there are no contradictory k-mers (i.e. unambiguously from the opposing reference).

Maximum multi hits (parameter that dictates the number of alignments to the reference for a given read) was assigned as 20 and transcriptome max hits (maximum number of mappings allowed for a read, when aligned to the transcriptome) of 60 was used.

For a given read, the best alignment was kept if the second-best alignment had two more mismatches, otherwise the read was discarded as non-unique.